Welcome to art_modern Documentation

This contains documentation for art_modern Users. Generated using:

• Sphinx: 9.1.0

• Python: 3.13.12 | packaged by conda-forge | (main, Feb  5 2026, 05:53:46) [GCC 14.3.0]

• myst_parser: 5.0.0

Contents

• art_modern: Modernized ART Simulator of Diverse Next-Generation Sequencing Reads
  • Introduction
  • Quick Start
  • Advanced Topics
  • Building ART/art_modern Profiles
  • What’s Next?
  • Acknowledgements
  • Citing This Work
  • Stargazers Over Time
• Installing art_modern
  • Operating System
  • C/C++ Compilers
  • Essential Tools for Building
  • Required External Libraries
  • Optional External Libraries
  • Required Bundled/External Libraries
  • Optional Bundled/External Dependencies
  • Required Bundled Dependencies
  • Optional Bundled Dependencies
  • CMake Variables
• Usage of art_modern
  • Parameter Controlling Simulation Behavior
  • Parameters Controlling Input
  • Parameters Controlling Output
  • Miscellaneous Parameters
  • Logging Parameters
  • Environment Variables
• Usage of art_profile_builder
  • Options
  • Environment Variables
  • Notes
  • Example
• Usage of am_compress
  • Implementation
  • Options
  • Usage Example
• Guide on Miscellaneous Topics
  • Guide on FASTA Format
  • Performance Hint
  • Platform-Specific Notes
• Frequently Asked Questions (FAQs)
  • Simulation
  • Software Engineering
  • Community
  • My question is still unanswered
• Design Topics
  • Motivation
  • Parallelism
  • Random Generators
  • I/O
  • Other Performance Bottlenecks
  • Miscellaneous
• Developing & Contributing
  • Common Development-Oriented Tasks
  • Release Cycle
  • Get Engaged
  • Miscellaneous Developer-Oriented Documentation
• Security Policy
  • Reporting a Vulnerability
  • Known Bugs in art_modern
  • Known Bugs in Original ART
• News & Release Notes
  • 1.3.4 (2026/02/28)
  • 1.3.3 (2026/01/08)
  • 1.3.2 (2025/12/23)
  • 1.3.1 (2025/12/15)
  • 1.3.0 (2025/11/14)
  • 1.2.1 (2025/11/06)
  • 1.2.0 (2025/10/21)
  • 1.1.10 (2025/10/12)
  • 1.1.9 (2025/10/11)
  • 1.1.8 (2025/09/29)
  • 1.1.7 (2025/09/18)
  • 1.1.6 (2025/09/12)
  • 1.1.5 (2025/09/12)
  • 1.1.4 (2025/08/31)
  • 1.1.3 (2025/03/05)
  • 1.1.2 (2025/02/16)
  • 1.1.1 (2025/02/02)
  • 1.1.0 (2025/01/23)
  • 1.0.1 (2025/01/17)
  • 1.0.0 (2025/01/17)
• Copyright
  • HTSlib by Genome Research Ltd
  • gitignore by GitHub
  • libceu by YU Zhejian
  • moodycamel::ConcurrentQueue<T> by Cameron Desrochers
  • BS::thread_pool by Barak Shoshany
  • {fmt} by Victor Zverovich
  • PCG, Minimal C Implementation by Melissa O’Neill
  • GNU Scientific Library by M. Galassi et al.
  • qreverse by Wunkolo
• GNU GENERAL PUBLIC LICENSE
  • Preamble
  • TERMS AND CONDITIONS
  • How to Apply These Terms to Your New Programs

• Search Page