Copyright

This project uses the GPL v3 License, a copy of which is available at License.md.

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This project is based on the source code of ART by Weichun Huang et al., under the GNU GPL v3 license.

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This project uses code from the following projects (in no particular order). All code used is either in the public domain or under a license that is compatible with GPL v3.

HTSlib by Genome Research Ltd

Available from https://github.com/samtools/htslib.

Affected files:

• /deps/labw_slim_htslib/cram/**, under the MIT/Expat License.

• /deps/labw_slim_htslib/**, under The Modified-BSD License.

NOTE: This project uses the source code retrieved from GitHub 1.23.1 Release Tarball.

gitignore by GitHub

Available from https://github.com/github/gitignore.

Affected files:

• /.gitignore

With CC0 1.0 Universal License.

NOTE Added in 1.0.0.

libceu by YU Zhejian

Affected files:

• /deps/cmake_collections/**

• /deps/slim_libceu/**

With MIT License.

NOTE Added in 1.0.0.

NOTE: This project was dead. New projects should consider Boost::Predef instead.

moodycamel::ConcurrentQueue<T> by Cameron Desrochers

Available from https://github.com/cameron314/concurrentqueue, commit 9afb997 at tag 1.0.5.

Affected files:

• /deps/concurrentqueue/**

Dual-licensed under Simplified BSD License and Boost Software License.

NOTE Added in 1.0.0.

BS::thread_pool by Barak Shoshany

Available from https://github.com/bshoshany/thread-pool, commit bd4533f at tag v5.1.0.

Affected files:

• /deps/thread-pool/**

Under the MIT License.

NOTE Added in 1.1.0.

{fmt} by Victor Zverovich

Available from https://github.com/fmtlib/fmt, release 12.1.0.

Affected files:

• /deps/slim_fmt/**

Under an MIT-like License.

NOTE Added in 1.1.1.

PCG, Minimal C Implementation by Melissa O’Neill

Available from https://www.pcg-random.org/download.html. Currently developed at https://github.com/imneme/pcg-c-basic.

Affected files:

• src/libam_support/ds/pcg_32_c.hh

Licensed under the Apache 2.0 License.

NOTE Added in 1.3.0.

GNU Scientific Library by M. Galassi et al.

Available from https://www.gnu.org/software/gsl/. The code used was adapted from the C version of the GSL 2.8 source tarball.

Affected files:

• src/libam_support/ds/GslDiscreteDistribution.hh, which is a re-implemented in C++ from randist/discrete.c in GSL 2.8.

Licensed under the GPL 3.0 license.

NOTE Added in 1.1.2.

qreverse by Wunkolo

Available from https://github.com/Wunkolo/qreverse/, commit fd54e4b.

Affected files:

• src/libam_support/seq/qreverse.c

• src/libam_support/seq/qreverse.h

Licensed under the MIT license.

NOTE Added in 1.3.0.